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Crystal Structure of PDE10A with 1H-benzimidazol-2-yl(4-((3-(tetrahydro-2H-pyran-4-yl)-2-pyridinyl)oxy)phenyl)methanone
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 277 1.6M Ammonium Sulfate, 0.1M MES monohydrate, 10% w/v 1,4-Dioxane
Crystal Properties Matthews coefficient Solvent content 4.17 70.53
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 253.34 α = 90 b = 253.34 β = 90 c = 253.34 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RIGAKU SATURN 944+ 2009-08-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-E SUPERBRIGHT 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 30 99.8 4.04 6.1 59555
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.5 30 44053 2333 99.8 0.16075 0.15977 0.18048 0.1845 RANDOM 37.954
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.159 r_dihedral_angle_4_deg 16.75 r_dihedral_angle_3_deg 16.503 r_dihedral_angle_1_deg 5.103 r_long_range_B_refined 4.025 r_long_range_B_other 4.025 r_scangle_other 2.16 r_mcangle_it 1.911 r_mcangle_other 1.911 r_scbond_it 1.312
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.159 r_dihedral_angle_4_deg 16.75 r_dihedral_angle_3_deg 16.503 r_dihedral_angle_1_deg 5.103 r_long_range_B_refined 4.025 r_long_range_B_other 4.025 r_scangle_other 2.16 r_mcangle_it 1.911 r_mcangle_other 1.911 r_scbond_it 1.312 r_scbond_other 1.312 r_mcbond_it 1.192 r_mcbond_other 1.191 r_angle_refined_deg 1.149 r_angle_other_deg 0.807 r_chiral_restr 0.064 r_bond_refined_d 0.007 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4944 Nucleic Acid Atoms Solvent Atoms 146 Heterogen Atoms 94
Software Software Software Name Purpose REFMAC refinement