Experiment: 4P5N

X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP		298	0.2M cadmium sulfate, 2.2M ammonium sulfate

Crystal Properties
Matthews coefficient	Solvent content
2.3	46.52

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 31.775	α = 73.93
b = 34.686	β = 72.85
c = 38.253	γ = 79.46

Symmetry
Space Group	P 1

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	CCD	ADSC QUANTUM 315		2012-07-27	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	NSLS BEAMLINE X29A	0.9793	NSLS	X29A

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	R Sym I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.49	50	95.7	0.048	0.047	18.8	2.8		23265

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.49	1.52	91.6		0.147	9.88	2.7	1141

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (Observed)	R-Work	R-Free	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	SAD	THROUGHOUT	1.49	35.51	23265	1191	95.64	0.1392	0.1371	0.1802	RANDOM	16.481

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.42	-2.78	0.52	1.37	1.14	-0.95

RMS Deviations
Key	Refinement Restraint Deviation
r_sphericity_free	43.027
r_dihedral_angle_2_deg	31.217
r_rigid_bond_restr	14.15
r_dihedral_angle_4_deg	13.593
r_sphericity_bonded	13.157
r_dihedral_angle_3_deg	13.077
r_dihedral_angle_1_deg	6.043
r_scbond_it	2.482
r_mcangle_it	2.018
r_mcbond_it	1.599

RMS Deviations
Key	Refinement Restraint Deviation
r_sphericity_free	43.027
r_dihedral_angle_2_deg	31.217
r_rigid_bond_restr	14.15
r_dihedral_angle_4_deg	13.593
r_sphericity_bonded	13.157
r_dihedral_angle_3_deg	13.077
r_dihedral_angle_1_deg	6.043
r_scbond_it	2.482
r_mcangle_it	2.018
r_mcbond_it	1.599
r_angle_refined_deg	1.302
r_chiral_restr	0.09
r_bond_refined_d	0.008
r_gen_planes_refined	0.006

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	1134
Nucleic Acid Atoms
Solvent Atoms	156
Heterogen Atoms	50

Software

Software
Software Name	Purpose
SCALEPACK	data scaling
REFMAC	refinement
PDB_EXTRACT	data extraction

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.