X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP8.5293HiCutinase 30 mg mL-1, 0.1 M Tris/HCl buffer pH 8.5, 50 mM lysine, 100 mg mL-1 (app. 8.6%) isopropanol, 50 mg mL-1 (app. 4.3 %) dioxane, PEG 4K 22% v/v of 50% w/v stock solutions
Crystal Properties
Matthews coefficientSolvent content
2.244.2

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 125.548α = 90
b = 126.999β = 90
c = 134.505γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray120IMAGE PLATERIGAKU RAXIS II1995-06-20SINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU RU2001.54

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
133099.55.94.543738
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
133.1697.50.3242.33.6

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONTHROUGHOUT329.761142118133899.360.174810.17410.19597RANDOM27.819
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.052.39-1.34
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.083
r_dihedral_angle_3_deg16.371
r_dihedral_angle_4_deg16.258
r_dihedral_angle_1_deg5.624
r_long_range_B_refined5.39
r_long_range_B_other5.39
r_scangle_other3.869
r_mcangle_other2.918
r_mcangle_it2.917
r_scbond_it2.312
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.083
r_dihedral_angle_3_deg16.371
r_dihedral_angle_4_deg16.258
r_dihedral_angle_1_deg5.624
r_long_range_B_refined5.39
r_long_range_B_other5.39
r_scangle_other3.869
r_mcangle_other2.918
r_mcangle_it2.917
r_scbond_it2.312
r_scbond_other2.312
r_mcbond_it1.757
r_mcbond_other1.756
r_angle_other_deg1.539
r_angle_refined_deg1.445
r_chiral_restr0.084
r_bond_refined_d0.011
r_bond_other_d0.008
r_gen_planes_refined0.008
r_gen_planes_other0.006
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms16877
Nucleic Acid Atoms
Solvent Atoms98
Heterogen Atoms

Software

Software
Software NamePurpose
MOSFLMdata reduction
AMoREphasing
REFMACrefinement