X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP4.52939 % w/v PEG 10K, 0.1 M sodium citrate, 0.1 M calcium acetate, 5 % v/v glycerol
Crystal Properties
Matthews coefficientSolvent content
2.3948.58

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 83.858α = 90
b = 122.856β = 90
c = 156γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDRAYONIX MX-2252012-11-27MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONBESSY BEAMLINE 14.10.98BESSY14.1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.547.999.10.1030.1035.93.9254063
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.51.5894.20.541.72.7

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.547.92411681275099.050.195170.193740.22238RANDOM10.646
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.17-0.150.32
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.15
r_dihedral_angle_4_deg14.818
r_dihedral_angle_3_deg10.331
r_dihedral_angle_1_deg6.316
r_long_range_B_refined4.504
r_long_range_B_other4.198
r_angle_refined_deg1.385
r_angle_other_deg0.792
r_scangle_other0.666
r_mcangle_other0.516
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.15
r_dihedral_angle_4_deg14.818
r_dihedral_angle_3_deg10.331
r_dihedral_angle_1_deg6.316
r_long_range_B_refined4.504
r_long_range_B_other4.198
r_angle_refined_deg1.385
r_angle_other_deg0.792
r_scangle_other0.666
r_mcangle_other0.516
r_mcangle_it0.515
r_scbond_it0.434
r_scbond_other0.434
r_mcbond_it0.3
r_mcbond_other0.299
r_chiral_restr0.083
r_bond_refined_d0.01
r_gen_planes_refined0.007
r_bond_other_d0.001
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms11833
Nucleic Acid Atoms
Solvent Atoms1922
Heterogen Atoms12

Software

Software
Software NamePurpose
REFMACrefinement