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C. Elegans Clp1 and ADP and Mg2+ (turnover state)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.5 293 100 mM Na2HPO4/KH2PO4
200 mM NaCl
15 mM MgCl2
90 mM sarcosine
25% (w/v) PEG 1000, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.44 49.61
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 100.15 α = 90 b = 100.15 β = 90 c = 40.41 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MAR scanner 345 mm plate Rigaku VariMax 2010-08-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 HF 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 50 96.3 2.1 13457 -3 54
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.6 2.7 99.3 2.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 2.6 32.77 12787 668 100 0.20525 0.20266 0.2024 0.25558 0.2548 RANDOM 36.373
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.11 0.06 0.11 -0.17
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.207 r_dihedral_angle_3_deg 13.675 r_dihedral_angle_4_deg 13.398 r_dihedral_angle_1_deg 4.584 r_angle_refined_deg 0.872 r_scangle_it 0.582 r_mcangle_it 0.368 r_scbond_it 0.347 r_nbtor_refined 0.292 r_mcbond_it 0.21
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.207 r_dihedral_angle_3_deg 13.675 r_dihedral_angle_4_deg 13.398 r_dihedral_angle_1_deg 4.584 r_angle_refined_deg 0.872 r_scangle_it 0.582 r_mcangle_it 0.368 r_scbond_it 0.347 r_nbtor_refined 0.292 r_mcbond_it 0.21 r_symmetry_vdw_refined 0.159 r_nbd_refined 0.156 r_xyhbond_nbd_refined 0.098 r_symmetry_hbond_refined 0.068 r_chiral_restr 0.054 r_metal_ion_refined 0.023 r_bond_refined_d 0.006 r_gen_planes_refined 0.002 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3114 Nucleic Acid Atoms Solvent Atoms 54 Heterogen Atoms 41
Software Software Software Name Purpose MAR345dtb data collection REFMAC refinement XDS data reduction XSCALE data scaling