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C. Elegans Clp1 bound to ATP, and Mn2+(ATP-bound state)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.5 293 100 mM Na2HPO4/KH2PO4
200 mM NaCl
15 mM MgCl2
90 mM sarcosine
25% (w/v) PEG 1000, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.42 49.27
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 99.34 α = 90 b = 99.34 β = 90 c = 40.8 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2010-07-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 0.9793 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 50 98.5 3.6 19707 -3 46.1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.4 97 3.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 2.3 43.03 18717 986 100 0.20398 0.20209 0.1996 0.24096 0.2364 RANDOM 43.904
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.04 -0.52 -1.04 1.55
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.173 r_dihedral_angle_3_deg 11.759 r_dihedral_angle_4_deg 10.94 r_dihedral_angle_1_deg 4.325 r_angle_refined_deg 0.832 r_scangle_it 0.632 r_scbond_it 0.381 r_mcangle_it 0.336 r_nbtor_refined 0.288 r_mcbond_it 0.195
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.173 r_dihedral_angle_3_deg 11.759 r_dihedral_angle_4_deg 10.94 r_dihedral_angle_1_deg 4.325 r_angle_refined_deg 0.832 r_scangle_it 0.632 r_scbond_it 0.381 r_mcangle_it 0.336 r_nbtor_refined 0.288 r_mcbond_it 0.195 r_nbd_refined 0.15 r_symmetry_vdw_refined 0.105 r_xyhbond_nbd_refined 0.086 r_symmetry_hbond_refined 0.073 r_chiral_restr 0.051 r_bond_refined_d 0.006 r_gen_planes_refined 0.002 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3120 Nucleic Acid Atoms Solvent Atoms 96 Heterogen Atoms 45
Software Software Software Name Purpose DNA data collection REFMAC refinement XDS data reduction XSCALE data scaling