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Kuenenia stuttgartiensis hydroxylamine oxidoreductase soaked in hydroxylamine
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4N4J PDB ENTRY 4N4J
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.4 293 1.3 M ammonium sulfate, 0.05-0.10 M sodium phosphate, pH 7.4, detergent additive cyclohexylbutanoyl-N-hydroxyethylglucamide (C-HEGA-10), VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.04 59.53
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 130.07 α = 90 b = 130.07 β = 90 c = 130.07 γ = 90
Symmetry Space Group P 21 3
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL PSI PILATUS 6M 2011-08-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 1.00000 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 46 99.9 0.076 17.3 6.6 35645 35645
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.3 100 0.356 4.9 6.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT PDB ENTRY 4N4J 2.2 45.99 35645 35645 1786 99.95 0.16817 0.16817 0.16722 0.1658 0.18723 0.1868 RANDOM 21.933
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.43 r_dihedral_angle_4_deg 14.922 r_dihedral_angle_3_deg 12.514 r_dihedral_angle_1_deg 5.484 r_scangle_it 1.275 r_angle_refined_deg 0.961 r_scbond_it 0.823 r_angle_other_deg 0.8 r_mcangle_it 0.594 r_mcbond_it 0.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.43 r_dihedral_angle_4_deg 14.922 r_dihedral_angle_3_deg 12.514 r_dihedral_angle_1_deg 5.484 r_scangle_it 1.275 r_angle_refined_deg 0.961 r_scbond_it 0.823 r_angle_other_deg 0.8 r_mcangle_it 0.594 r_mcbond_it 0.31 r_chiral_restr 0.057 r_mcbond_other 0.048 r_gen_planes_refined 0.038 r_gen_planes_other 0.011 r_bond_refined_d 0.008 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3940 Nucleic Acid Atoms Solvent Atoms 306 Heterogen Atoms 373
Software Software Software Name Purpose HEIDI data collection REFMAC refinement XDS data reduction XSCALE data scaling REFMAC phasing