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Crystal structure of the transport unit of the autotransporter AIDA-I from Escherichia coli
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 273 100 mM sodium cacodylate, and 27.5 % (v/v) PEG 2000 MME, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 273K
Crystal Properties Matthews coefficient Solvent content 2.28 45.99
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 40.33 α = 90 b = 85.85 β = 90 c = 134.05 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2012-12-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-2 0.8726 ESRF ID23-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3 50 92.3 9173 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.15 3.2 94.3 0.446 3.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3 39.67 8556 9183 493 97.85 0.25061 0.24777 0.30639 0.2929 RANDOM 39.524
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -3.09 3.81 -0.72
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.089 r_dihedral_angle_3_deg 25.414 r_dihedral_angle_4_deg 24.06 r_sphericity_bonded 10.036 r_dihedral_angle_1_deg 5.274 r_rigid_bond_restr 3.698 r_angle_refined_deg 1.648 r_mcangle_it 1.162 r_scbond_it 1.129 r_mcbond_it 0.797
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.089 r_dihedral_angle_3_deg 25.414 r_dihedral_angle_4_deg 24.06 r_sphericity_bonded 10.036 r_dihedral_angle_1_deg 5.274 r_rigid_bond_restr 3.698 r_angle_refined_deg 1.648 r_mcangle_it 1.162 r_scbond_it 1.129 r_mcbond_it 0.797 r_chiral_restr 0.094 r_bond_refined_d 0.015 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_sphericity_free
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2234 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose ADSC data collection Rosetta model building REFMAC refinement XDS data reduction XSCALE data scaling Rosetta phasing