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hinTrmD in complex with 5-PHENYLTHIENO[2,3-D]PYRIMIDIN-4(3H)-ONE
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.5 293 Protein at 10 mg/mL in the buffer: 20mM Tris pH 8.0, 150 mM NaCl, 10% Glycerol, 1mM DTT, 1mM EDTA. mixed 1:1 with well solution containing: 200 mM CaAcetate, 24% PEG 400, 100 mM Sodium Acetate, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.72 54.77
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 93.345 α = 90 b = 93.345 β = 90 c = 178.908 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 140 CCD 2012-02-10 SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 31-ID 0.97 APS 31-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.287 30.124 98.6 0.186 0.186 6.3 10.2 43053
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.55 1.63 95.1 0.032 3.225 0.2 8.1 5995
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.55 30.12 41769 2113 95.42 0.2068 0.2053 0.2349 0.2504 RANDOM 28.122
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.03 0.52 1.03 -1.55
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.948 r_dihedral_angle_4_deg 16.507 r_dihedral_angle_3_deg 14.283 r_dihedral_angle_1_deg 5.141 r_scangle_it 3.727 r_scbond_it 2.178 r_mcangle_it 1.442 r_angle_refined_deg 1.251 r_angle_other_deg 0.849 r_mcbond_it 0.746
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.948 r_dihedral_angle_4_deg 16.507 r_dihedral_angle_3_deg 14.283 r_dihedral_angle_1_deg 5.141 r_scangle_it 3.727 r_scbond_it 2.178 r_mcangle_it 1.442 r_angle_refined_deg 1.251 r_angle_other_deg 0.849 r_mcbond_it 0.746 r_mcbond_other 0.164 r_chiral_restr 0.072 r_bond_refined_d 0.011 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1872 Nucleic Acid Atoms Solvent Atoms 206 Heterogen Atoms 16
Software Software Software Name Purpose SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction CrystalClear data collection d*TREK data reduction AMoRE phasing