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Structure of Aspergillus oryzae AA11 Lytic Polysaccharide Monooxygenase with Cu(I)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 6 292 10 mM zinc chloride, 100 mM MES, pH 6.0, 20% w/v PEG6000, crystals soaked in solution containing 2 mM copper chloride to replace zinc, VAPOR DIFFUSION, temperature 292K
Crystal Properties Matthews coefficient Solvent content 2.41 48.93
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 56.269 α = 90 b = 60.629 β = 90 c = 65.176 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2013-07-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 0.980 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 44.39 99.3 0.052 0.033 17.9 6.3 44262 44262 1 1 11.7
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.4 1.42 95.7 0.742 2 5.1 2093
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION ISOTROPIC STRUCTURE REFINEMENT THROUGHOUT 1.4 42.63 44262 42001 2200 99.07 0.1323 0.1323 0.1314 0.1306 0.1507 0.1493 RANDOM 18.6373
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.4 0.13 0.27
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 33.16 r_dihedral_angle_2_deg 30.329 r_dihedral_angle_4_deg 22.076 r_sphericity_bonded 10.715 r_dihedral_angle_3_deg 8.866 r_dihedral_angle_1_deg 7.003 r_mcangle_it 2.352 r_rigid_bond_restr 2.204 r_mcbond_it 1.81 r_mcbond_other 1.81
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 33.16 r_dihedral_angle_2_deg 30.329 r_dihedral_angle_4_deg 22.076 r_sphericity_bonded 10.715 r_dihedral_angle_3_deg 8.866 r_dihedral_angle_1_deg 7.003 r_mcangle_it 2.352 r_rigid_bond_restr 2.204 r_mcbond_it 1.81 r_mcbond_other 1.81 r_angle_refined_deg 1.416 r_angle_other_deg 0.835 r_chiral_restr 0.094 r_bond_refined_d 0.009 r_gen_planes_refined 0.007 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1377 Nucleic Acid Atoms Solvent Atoms 187 Heterogen Atoms 14
Software Software Software Name Purpose SCALA data scaling SHELX phasing REFMAC refinement PDB_EXTRACT data extraction XDS data reduction REFMAC phasing