4M8S

Crystal structure of 3-ketoacyl -(acyl carrier protein) reductase (FabG) from Neisseria meningitidis


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP296.15250mM Ammonium phosphate dibasic, 25% PEG 3350, VAPOR DIFFUSION, HANGING DROP, temperature 296.15K
Crystal Properties
Matthews coefficientSolvent content
2.0941.08

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 66.89α = 90
b = 111.27β = 90
c = 117.1γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 315r2013-03-05MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAUSTRALIAN SYNCHROTRON BEAMLINE MX20.9537Australian SynchrotronMX2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
1235.361005981859818
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
122.0599.9

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT234.545676656732302099.940.174530.173240.19881RANDOM23.575
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.01-0.01
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.231
r_dihedral_angle_4_deg17.695
r_dihedral_angle_3_deg12.418
r_long_range_B_refined5.693
r_long_range_B_other5.454
r_dihedral_angle_1_deg5.02
r_scangle_other2.559
r_mcangle_it2.054
r_mcangle_other2.054
r_scbond_it1.462
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.231
r_dihedral_angle_4_deg17.695
r_dihedral_angle_3_deg12.418
r_long_range_B_refined5.693
r_long_range_B_other5.454
r_dihedral_angle_1_deg5.02
r_scangle_other2.559
r_mcangle_it2.054
r_mcangle_other2.054
r_scbond_it1.462
r_scbond_other1.461
r_angle_other_deg1.213
r_angle_refined_deg1.189
r_mcbond_it1.176
r_mcbond_other1.175
r_chiral_restr0.063
r_bond_refined_d0.008
r_bond_other_d0.005
r_gen_planes_refined0.004
r_gen_planes_other0.003
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms7167
Nucleic Acid Atoms
Solvent Atoms677
Heterogen Atoms

Software

Software
Software NamePurpose
Blu-Icedata collection
PHASERphasing
REFMACrefinement
MOSFLMdata reduction
SCALAdata scaling