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Bovine beta-lactoglobulin crystallized in the presence of 2 mM zinc chloride
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3PH5 PDB ENTRY 3PH5
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 BATCH 6 277 2 mM zinc chloride, pH 6.0, BATCH, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.88 57.23
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 92.83 α = 90 b = 92.83 β = 90 c = 42.31 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M-F 2011-11-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06DA 1.0000 SLS X06DA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 19.73 99.8 29.62 11.3 8425 8425 -3 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.4 2.46 99.5 3.05 9.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 3PH5 2.4 19.73 7414 7414 1011 99.7 0.20016 0.19597 0.1997 0.23147 0.2354 RANDOM 74.463
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.35 0.67 1.35 -4.37
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.025 r_dihedral_angle_3_deg 12.414 r_dihedral_angle_1_deg 4.472 r_long_range_B_refined 3.609 r_mcangle_it 3.122 r_dihedral_angle_4_deg 2.86 r_scbond_it 2.757 r_mcbond_it 2.105 r_mcbond_other 2.102 r_angle_refined_deg 0.898
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.025 r_dihedral_angle_3_deg 12.414 r_dihedral_angle_1_deg 4.472 r_long_range_B_refined 3.609 r_mcangle_it 3.122 r_dihedral_angle_4_deg 2.86 r_scbond_it 2.757 r_mcbond_it 2.105 r_mcbond_other 2.102 r_angle_refined_deg 0.898 r_angle_other_deg 0.664 r_chiral_restr 0.055 r_bond_refined_d 0.004 r_gen_planes_refined 0.002 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1261 Nucleic Acid Atoms Solvent Atoms 4 Heterogen Atoms 2
Software Software Software Name Purpose RemDAq data collection PHASER phasing REFMAC refinement XDS data reduction XSCALE data scaling