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Crystal Structure of tRNA Proline (CGG) Bound to Codon CCG-G on the Ribosome
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 7 293 4% PEG 20k, 4% PEG550 MME, 0.1M TRIS-ACETATE, 0.2M KSCN, 10mM MgCl, pH 7.0, vapor diffusion, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.3 62.74
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 208.252 α = 90 b = 448.398 β = 90 c = 624.576 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC q315 2012-04-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 24-ID-E 0.97 APS 24-ID-E
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.31 35.1331 99.4 0.321 4.59 854421 854421 -3 -3 60.54
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.31 3.4 96.7 0.014 1.04
Refinement Statistics Diffraction ID Structure Solution Method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION 3.48000627319 34.9717349678 1.99178003261 737255 33682 99.6398259271 0.231833199846 0.230031932606 0.2311 0.269912232014 0.2691 86.7956563996
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 17.2608203467 f_angle_d 1.08292329352 f_chiral_restr 0.0628910087841 f_plane_restr 0.00757464884309 f_bond_d 0.00573294659807
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 93008 Nucleic Acid Atoms 198232 Solvent Atoms Heterogen Atoms 762
Software Software Software Name Purpose XSCALE data scaling PHENIX refinement PDB_EXTRACT data extraction