X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP8.52891.6 M ammonium phosphate monobasic, 100 mM MES, pH 5.5 or 100 mM Tris, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 289K
Crystal Properties
Matthews coefficientSolvent content
3.2462.07

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 230.078α = 90
b = 230.078β = 90
c = 230.078γ = 90
Symmetry
Space GroupP 2 3

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 315r2013-03-28MSINGLE WAVELENGTH
21x-ray100PIXELDECTRIS PILATUS 6M2013-02-22MSINGLE WAVELENGTH
31x-ray100CCDADSC QUANTUM 315r2013-03-28MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONNSLS BEAMLINE X29A1.2146NSLSX29A
2SYNCHROTRONAPS BEAMLINE 24-ID-C1.0086APS24-ID-C
3SYNCHROTRONNSLS BEAMLINE X29A0.9790NSLSX29A

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
1,2,32.55699.1139809138551
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1,2,32.5

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSAD/SIRTHROUGHOUT2.555.8139809131307694599.140.209860.207890.24703RANDOM45.572
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.069
r_sphericity_free22.921
r_dihedral_angle_4_deg19.071
r_dihedral_angle_3_deg16.296
r_sphericity_bonded7.641
r_dihedral_angle_1_deg4.818
r_scbond_it3.167
r_mcangle_it2.84
r_rigid_bond_restr2.673
r_mcbond_it2.375
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.069
r_sphericity_free22.921
r_dihedral_angle_4_deg19.071
r_dihedral_angle_3_deg16.296
r_sphericity_bonded7.641
r_dihedral_angle_1_deg4.818
r_scbond_it3.167
r_mcangle_it2.84
r_rigid_bond_restr2.673
r_mcbond_it2.375
r_mcbond_other2.375
r_angle_refined_deg1.298
r_angle_other_deg1.125
r_chiral_restr0.061
r_bond_refined_d0.007
r_gen_planes_refined0.003
r_bond_other_d0.002
r_gen_planes_other0.002
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcangle_other
r_scbond_other
r_scangle_it
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms21904
Nucleic Acid Atoms
Solvent Atoms1335
Heterogen Atoms147

Software

Software
Software NamePurpose
CBASSdata collection
SOLVEphasing
MLPHAREphasing
REFMACrefinement
XDSdata reduction
XDSdata scaling