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Structure of the vaccinia virus NF- B antagonist A46
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 7.5 295.15 100 mM bis-tris-propane pH 7.5, 150 mM NaBr, 18% PEG3350, VAPOR DIFFUSION, temperature 295.15K
Crystal Properties Matthews coefficient Solvent content 2.96 58.51
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 107.114 α = 90 b = 107.633 β = 90 c = 137.899 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2013-02-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 0.9793 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.99 75.924 99.5 0.163 10.4 7.9 54679 54421 24.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.99 2.04 92.4 1.809 1.3 7.8 3762
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.99 42.46 54679 51639 2759 99.48 0.19803 0.1969 0.2061 0.21872 0.2276 RANDOM 30.764
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.36 -0.22 -0.15
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_2_deg 34.269 f_dihedral_angle_4_deg 19.021 f_dihedral_angle_3_deg 13.912 f_long_range_B_refined 5.015 f_long_range_B_other 4.931 f_dihedral_angle_1_deg 4.67 f_scangle_other 3.489 f_mcangle_it 2.641 f_mcangle_other 2.641 f_scbond_it 2.175
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_2_deg 34.269 f_dihedral_angle_4_deg 19.021 f_dihedral_angle_3_deg 13.912 f_long_range_B_refined 5.015 f_long_range_B_other 4.931 f_dihedral_angle_1_deg 4.67 f_scangle_other 3.489 f_mcangle_it 2.641 f_mcangle_other 2.641 f_scbond_it 2.175 f_scbond_other 2.174 f_mcbond_it 1.686 f_mcbond_other 1.684 f_angle_refined_deg 1.202 f_angle_other_deg 0.749 f_chiral_restr 0.065 f_bond_refined_d 0.008 f_gen_planes_refined 0.004 f_bond_other_d 0.001 f_gen_planes_other 0.001 f_nbd_refined f_nbd_other f_nbtor_refined f_nbtor_other f_xyhbond_nbd_refined f_xyhbond_nbd_other f_metal_ion_refined f_metal_ion_other f_symmetry_vdw_refined f_symmetry_vdw_other f_symmetry_hbond_refined f_symmetry_hbond_other f_symmetry_metal_ion_refined f_symmetry_metal_ion_other f_scangle_it f_rigid_bond_restr f_sphericity_free f_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4352 Nucleic Acid Atoms Solvent Atoms 229 Heterogen Atoms 3
Software Software Software Name Purpose MxCuBE data collection SHELXCD phasing SHELXE model building REFMAC refinement PHENIX refinement XDS data reduction SCALA data scaling