☰ Navigation Tabs
Crystal structure of a topoisomerase ATPase inhibitor
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 293 18-25% Peg4000, 0.2M Ammonium Acetate, 0.1M MIB pH 7, hanging drop, inhibitor soak, temperature 293K, VAPOR DIFFUSION, HANGING DROP
Crystal Properties Matthews coefficient Solvent content 2.16 43.09
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 73.411 α = 90 b = 94.706 β = 90 c = 61.18 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RAYONIX MX-225 monochromator 2007-10-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 31-ID 1.000 APS 31-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.608 22.092 99.9 0.093 0.093 14.7 7.1 21859 21859
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.75 1.84 100 0.577 0.577 1.2 7.2 3152
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.75 22.08 21842 1117 99.9 0.1951 0.1936 0.2006 0.2236 0.2206 RANDOM 22.675
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.08 -0.56 0.49
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.434 r_dihedral_angle_4_deg 12.423 r_dihedral_angle_3_deg 11.327 r_dihedral_angle_1_deg 4.656 r_scangle_it 1.7 r_scbond_it 1.113 r_angle_refined_deg 1.079 r_angle_other_deg 0.771 r_mcangle_it 0.684 r_mcbond_it 0.446
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.434 r_dihedral_angle_4_deg 12.423 r_dihedral_angle_3_deg 11.327 r_dihedral_angle_1_deg 4.656 r_scangle_it 1.7 r_scbond_it 1.113 r_angle_refined_deg 1.079 r_angle_other_deg 0.771 r_mcangle_it 0.684 r_mcbond_it 0.446 r_nbd_refined 0.195 r_nbd_other 0.182 r_nbtor_refined 0.169 r_symmetry_vdw_refined 0.135 r_symmetry_vdw_other 0.104 r_symmetry_hbond_refined 0.094 r_xyhbond_nbd_refined 0.087 r_nbtor_other 0.08 r_mcbond_other 0.069 r_chiral_restr 0.054 r_bond_refined_d 0.005 r_gen_planes_refined 0.002 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1485 Nucleic Acid Atoms Solvent Atoms 120 Heterogen Atoms 33
Software Software Software Name Purpose SCALA data scaling AMoRE phasing REFMAC refinement PDB_EXTRACT data extraction MOSFLM data reduction