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Crystal structure of the human metapneumovirus matrix protein
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2VQP PDB ENTRY 2VQP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8 293 20% PEG6000, 100 mM Tris, pH 8.0, 10 mM zinc chloride, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.76 55.46
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 62.009 α = 90 b = 62.009 β = 90 c = 275.385 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2012-05-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 0.97949 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.83 53.701 99.3 0.194 0.205 9.5 9.6 28144 27947 2 2 76.47
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.83 2.99 99.1 1.82 1.9 1.7 9.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2VQP 2.83 53.7 28144 27940 1403 99.05 0.1873 0.1851 0.1888 0.2287 0.2143 RANDOM 87.8343
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -17.5989 -17.5989 35.1978
RMS Deviations Key Refinement Restraint Deviation t_other_torsion 26.3 t_omega_torsion 3.48 t_angle_deg 1.53 t_gen_planes 0.0189 t_bond_d 0.012 t_trig_c_planes 0.0085 t_incorr_chiral_ct t_it t_nbd
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6935 Nucleic Acid Atoms Solvent Atoms 174 Heterogen Atoms 5
Software Software Software Name Purpose PHASER phasing BUSTER-TNT refinement PDB_EXTRACT data extraction GDA data collection HKL-2000 data reduction SCALA data scaling BUSTER refinement