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EGFR-K IN COMPLEX WITH N-[3-[[5-chloro-4-(1H-indol-3-yl)pyrimidin-2-yl]amino]-4-methoxy-phenyl] Prop-2-enamide
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 4.6 293 The protein at 6 mg/ml was crystallized from 0.2 M NH4Cl, 1.2 M Na-K-tartrate buffered with 10mM acetate at pH 4.6 and 0.15M Hepes pH 7.0, VAPOR DIFFUSION, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.66 66
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 144.892 α = 90 b = 144.892 β = 90 c = 144.892 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL PSI PILATUS 6M 2010-07-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 1.0 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.63 102.6 99.9 0.092 0.092 32.02 24.4 15034 15026 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.64 2.78 100 0.697 0.445 9.75 25.5 2185
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.64 102.6 14487 14487 539 99.95 0.16599 0.16599 0.16465 0.1701 0.20299 0.2078 RANDOM 44.114
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.267 r_dihedral_angle_4_deg 21.418 r_dihedral_angle_3_deg 12.409 r_dihedral_angle_1_deg 5.443 r_scangle_it 4.845 r_scbond_it 3.075 r_mcangle_it 2.21 r_mcbond_it 1.164 r_angle_refined_deg 1.045 r_angle_other_deg 0.723
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.267 r_dihedral_angle_4_deg 21.418 r_dihedral_angle_3_deg 12.409 r_dihedral_angle_1_deg 5.443 r_scangle_it 4.845 r_scbond_it 3.075 r_mcangle_it 2.21 r_mcbond_it 1.164 r_angle_refined_deg 1.045 r_angle_other_deg 0.723 r_mcbond_other 0.217 r_nbd_refined 0.191 r_nbd_other 0.175 r_nbtor_refined 0.174 r_xyhbond_nbd_other 0.174 r_xyhbond_nbd_refined 0.153 r_symmetry_vdw_other 0.141 r_symmetry_vdw_refined 0.11 r_symmetry_hbond_refined 0.099 r_nbtor_other 0.08 r_chiral_restr 0.059 r_bond_refined_d 0.007 r_gen_planes_other 0.005 r_bond_other_d 0.003 r_gen_planes_refined 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2437 Nucleic Acid Atoms Solvent Atoms 69 Heterogen Atoms 31
Software Software Software Name Purpose DA+ data collection PHASER phasing REFMAC refinement XDS data reduction XSCALE data scaling