4LES

2.2 Angstrom Crystal Structure of Conserved Hypothetical Protein from Bacillus anthracis.


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP4.2295Protein: 7.4 mG/mL, 0.25 M Sodium chloride, 0.01 M Tris-HCL buffer pH 8.3; Screen: JSCG+ (C6), 0.1 M Phosphate-citrate buffer pH 4.2, 40% (v/v) PEG 300, VAPOR DIFFUSION, SITTING DROP, temperature 295K
Crystal Properties
Matthews coefficientSolvent content
2.3146.81

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 95.754α = 90
b = 95.754β = 90
c = 41.518γ = 120
Symmetry
Space GroupP 63

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 300 mm CCDBeryllium lenses2013-06-17MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 21-ID-G0.97856APS21-ID-G

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.2301000.05232.26.41128211282-351
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.22.241000.5223.56.3552

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT2.229.34106901069053899.890.176930.176930.175290.21151RANDOM65.726
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.07-0.03-0.070.23
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg29.021
r_dihedral_angle_4_deg19.307
r_dihedral_angle_3_deg9.974
r_long_range_B_refined9.695
r_long_range_B_other9.671
r_scangle_other5.829
r_scbond_it3.662
r_scbond_other3.657
r_mcangle_it3.289
r_mcangle_other3.287
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg29.021
r_dihedral_angle_4_deg19.307
r_dihedral_angle_3_deg9.974
r_long_range_B_refined9.695
r_long_range_B_other9.671
r_scangle_other5.829
r_scbond_it3.662
r_scbond_other3.657
r_mcangle_it3.289
r_mcangle_other3.287
r_dihedral_angle_1_deg3.275
r_mcbond_other2.257
r_mcbond_it2.256
r_angle_refined_deg1.712
r_angle_other_deg0.696
r_chiral_restr0.094
r_bond_refined_d0.011
r_gen_planes_refined0.005
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1151
Nucleic Acid Atoms
Solvent Atoms39
Heterogen Atoms22

Software

Software
Software NamePurpose
Blu-Icedata collection
PHENIXmodel building
REFMACrefinement
HKL-3000data reduction
HKL-3000data scaling
PHENIXphasing