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Crystal Structure of 2-(1-benzothiophen-7-yl)-4-[1-(piperidin-4-yl)-1H-pyrazol-4-yl]furo[2,3-c]pyridin-7-amine bound to TAK1-TAB1
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2EVA PDB ENTRY 2EVA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 293 0.75 M sodium citrate, 0.2 M sodium chloride, 0.1 M Tris, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.97 68.98
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.299 α = 90 b = 133.751 β = 90 c = 144.502 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M Dynamically bendable mirror 2008-11-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 1.0001 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.68 98.06 92.1 0.061 3 16317 16317
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.68 2.89 95.3 0.437 3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2EVA 2.68 98.06 14259 14259 764 92.08 0.23137 0.23137 0.2294 0.2355 0.26825 0.2716 RANDOM 78.175
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -5.3 -2.75 8.05
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.584 r_dihedral_angle_4_deg 17.171 r_dihedral_angle_3_deg 13.956 r_dihedral_angle_1_deg 5.354 r_scangle_it 3.102 r_scbond_it 1.97 r_mcangle_it 1.705 r_mcbond_it 1.458 r_angle_refined_deg 0.992 r_angle_other_deg 0.791
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.584 r_dihedral_angle_4_deg 17.171 r_dihedral_angle_3_deg 13.956 r_dihedral_angle_1_deg 5.354 r_scangle_it 3.102 r_scbond_it 1.97 r_mcangle_it 1.705 r_mcbond_it 1.458 r_angle_refined_deg 0.992 r_angle_other_deg 0.791 r_nbd_refined 0.188 r_mcbond_other 0.188 r_nbtor_refined 0.175 r_nbd_other 0.164 r_symmetry_vdw_other 0.143 r_xyhbond_nbd_refined 0.105 r_nbtor_other 0.08 r_symmetry_vdw_refined 0.067 r_chiral_restr 0.062 r_bond_refined_d 0.007 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2342 Nucleic Acid Atoms Solvent Atoms 1 Heterogen Atoms 30
Software Software Software Name Purpose MOLREP phasing REFMAC refinement XDS data reduction XSCALE data scaling