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Electron transferring flavoprotein of Acidaminococcus fermentans: Towards a mechanism of flavin-based electron bifurcation
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 277 17% PEG 3350, 0.1M Bis-Tris-Prop pH 7.5, 0.2M Sodium Formiat, 0.1M NaCl, 5mM NaDH, 1mM FAD, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.74 55.06
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 79.52 α = 90 b = 84.79 β = 90 c = 106.41 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray PIXEL PSI PILATUS 6M M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.45 50 97.6 127800 124710 -3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.45 45.07 124710 115322 6099 95.08 0.15296 0.15012 0.1577 0.20772 0.2149 RANDOM 22.695
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.1 -0.02 -1.08
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.985 r_sphericity_free 33.783 r_sphericity_bonded 21.386 r_dihedral_angle_4_deg 16.281 r_dihedral_angle_3_deg 13.269 r_dihedral_angle_1_deg 6.373 r_rigid_bond_restr 6.001 r_angle_refined_deg 2.363 r_angle_other_deg 1.003 r_chiral_restr 0.147
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.985 r_sphericity_free 33.783 r_sphericity_bonded 21.386 r_dihedral_angle_4_deg 16.281 r_dihedral_angle_3_deg 13.269 r_dihedral_angle_1_deg 6.373 r_rigid_bond_restr 6.001 r_angle_refined_deg 2.363 r_angle_other_deg 1.003 r_chiral_restr 0.147 r_bond_refined_d 0.023 r_gen_planes_refined 0.014 r_gen_planes_other 0.002 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_it r_mcbond_other r_mcangle_it r_scbond_it r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4561 Nucleic Acid Atoms Solvent Atoms 515 Heterogen Atoms 134
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling