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Structure of wtMHC class I with NY-ESO1 double mutant
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 1.9 M ammonium sulphate, 2% PEG 6K, 100 mM Tris-HCl, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.97 69.03
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 101.57 α = 90 b = 313.36 β = 90 c = 314.46 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 CCD MARMOSAIC 225 mm CCD bent collimating mirror and toroid 2013-04-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM14 1.0716 ESRF BM14
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.09 53.88 100 0.192 9.3 5.8 182537 182537
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.09 3.27 100 0.01015 2.2 5.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 3.09 53.8 173264 9155 98.82 0.17208 0.17058 0.1839 0.20054 0.207 RANDOM 48.226
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -29 5.71 23.3
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.327 r_dihedral_angle_4_deg 16.144 r_dihedral_angle_3_deg 15.895 r_dihedral_angle_1_deg 6.095 r_scangle_it 1.668 r_angle_refined_deg 1.159 r_scbond_it 0.952 r_mcangle_it 0.91 r_angle_other_deg 0.772 r_mcbond_it 0.48
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.327 r_dihedral_angle_4_deg 16.144 r_dihedral_angle_3_deg 15.895 r_dihedral_angle_1_deg 6.095 r_scangle_it 1.668 r_angle_refined_deg 1.159 r_scbond_it 0.952 r_mcangle_it 0.91 r_angle_other_deg 0.772 r_mcbond_it 0.48 r_chiral_restr 0.068 r_mcbond_other 0.057 r_bond_refined_d 0.009 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 44422 Nucleic Acid Atoms Solvent Atoms 55 Heterogen Atoms 150
Software Software Software Name Purpose MxCuBE data collection REFMAC refinement MOSFLM data reduction SCALA data scaling REFMAC phasing