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Structure of the Y34N MUTANT OF DEHALOPEROXIDASE-HEMOGLOBIN A FROM AMPHITRITE ORNATA WITH 2,4,6-TRICHLOROPHENOL
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 277 28-32% PEG4K, .2M ammonium sulfate, .02M sodium cacodylate, pH 6.5, vapor diffusion, hanging drop, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.16 42.96
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.553 α = 90 b = 67.259 β = 90 c = 67.89 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2012-03-04 SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-BM 1.0 APS 22-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.79 50 99 0.079 9.7 5.4 25994 25737 1 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.79 1.82 91 0.501 4 1166
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.79 47.78 33356 25678 1299 98.94 0.218 0.1499 0.1457 0.1574 0.2322 0.2389 RANDOM 28.62
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.6 -0.66 0.06
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 41.098 r_dihedral_angle_2_deg 36.008 r_dihedral_angle_4_deg 22.295 r_sphericity_bonded 17.906 r_dihedral_angle_3_deg 13.295 r_rigid_bond_restr 5.761 r_mcangle_it 5.301 r_dihedral_angle_1_deg 5.055 r_mcbond_it 4.44 r_mcbond_other 4.436
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 41.098 r_dihedral_angle_2_deg 36.008 r_dihedral_angle_4_deg 22.295 r_sphericity_bonded 17.906 r_dihedral_angle_3_deg 13.295 r_rigid_bond_restr 5.761 r_mcangle_it 5.301 r_dihedral_angle_1_deg 5.055 r_mcbond_it 4.44 r_mcbond_other 4.436 r_angle_refined_deg 1.589 r_angle_other_deg 1.153 r_chiral_restr 0.137 r_bond_refined_d 0.014 r_gen_planes_refined 0.009 r_gen_planes_other 0.009 r_bond_other_d 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2130 Nucleic Acid Atoms Solvent Atoms 216 Heterogen Atoms 112
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction SERGUI data collection