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Crystal structure of PqsR co-inducer binding domain
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 292 0.1M Ammonium acetate, 0.1M Tri sodium citrate pH 6.5, 3% MPD, VAPOR DIFFUSION, SITTING DROP, temperature 292K
Crystal Properties Matthews coefficient Solvent content 4.93 75.06
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 119.733 α = 90 b = 119.733 β = 90 c = 115.777 γ = 120
Symmetry Space Group P 65 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r M
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 0.9770 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 30 99.2 0.74 0.85 2 7.9 19299 17339 1 1 71.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.66 99.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MIRAS THROUGHOUT 2.5 28.98 1 16426 874 98.91 0.22399 0.2218 0.2272 0.26711 0.2673 RANDOM 99.889
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.25 0.25 0.25 -0.83
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.613 r_dihedral_angle_3_deg 23.104 r_dihedral_angle_4_deg 16.353 r_dihedral_angle_1_deg 8.517 r_angle_refined_deg 2.17 r_angle_other_deg 0.991 r_chiral_restr 0.123 r_bond_refined_d 0.017 r_gen_planes_refined 0.008 r_bond_other_d 0.001
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.613 r_dihedral_angle_3_deg 23.104 r_dihedral_angle_4_deg 16.353 r_dihedral_angle_1_deg 8.517 r_angle_refined_deg 2.17 r_angle_other_deg 0.991 r_chiral_restr 0.123 r_bond_refined_d 0.017 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1598 Nucleic Acid Atoms Solvent Atoms 3 Heterogen Atoms 16
Software Software Software Name Purpose SOLVE phasing REFMAC refinement XDS data reduction SCALA data scaling