☰ Navigation Tabs
Crystal Structure of E.coli Enoyl Reductase in Complex with NAD and AFN-1252
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1QSG
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.6 277 0.1M Sodium acetate pH 4.6, 10%-15% (w/v) PEG 4000, 200mM Ammonium acetate, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.48 50.37
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 79.77 α = 90 b = 79.77 β = 90 c = 324.528 γ = 120
Symmetry Space Group P 61 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV++ Mirrors M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU300 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 50 91.6 0.053 30.4 4.5 18306 1 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.6 2.69 85 0.061 4.4 3.2 1642
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1QSG 2.8 50 13988 731 91.71 0.23034 0.22812 0.2342 0.27308 0.2771 RANDOM 32.121
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.27 -0.13 -0.27 0.4
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.407 r_dihedral_angle_3_deg 16.78 r_dihedral_angle_4_deg 13.372 r_dihedral_angle_1_deg 5.647 r_angle_refined_deg 1.323 r_angle_other_deg 0.755 r_scangle_it 0.558 r_mcangle_it 0.434 r_scbond_it 0.327 r_mcbond_it 0.238
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.407 r_dihedral_angle_3_deg 16.78 r_dihedral_angle_4_deg 13.372 r_dihedral_angle_1_deg 5.647 r_angle_refined_deg 1.323 r_angle_other_deg 0.755 r_scangle_it 0.558 r_mcangle_it 0.434 r_scbond_it 0.327 r_mcbond_it 0.238 r_nbd_refined 0.193 r_nbd_other 0.171 r_symmetry_vdw_other 0.127 r_xyhbond_nbd_refined 0.116 r_symmetry_vdw_refined 0.11 r_nbtor_other 0.081 r_chiral_restr 0.062 r_symmetry_hbond_refined 0.045 r_mcbond_other 0.022 r_bond_refined_d 0.006 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3750 Nucleic Acid Atoms Solvent Atoms 29 Heterogen Atoms 144
Software Software Software Name Purpose CrystalClear data collection MOLREP phasing REFMAC refinement DENZO data reduction SCALEPACK data scaling