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Galectin-3 carbohydrate recognition domain in complex with thioditaloside
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 293 Reservoir solution (100 mM MgCl2, 100 mM Tris-HCl pH 7.0, 31% w/v polyethylene glycol 6000 and 5 mM -mercaptoethanol) and a 4 L drop consisting of 2 L 70 mg mL-1 apo galectin-3 CRD protein in PBS and 2 L reservoir solution, supplemented with 100 mM TDT. , VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.02 39.09
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 35.78 α = 90 b = 57.855 β = 90 c = 62.65 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2011-06-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON AUSTRALIAN SYNCHROTRON BEAMLINE MX2 0.95369 Australian Synchrotron MX2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.15 42.5 99.4 466454 46696 1 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.15 1.21 98.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.15 22.51 46696 44275 2362 99.28 0.13918 0.13773 0.1344 0.16737 0.1639 RANDOM 14.33
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.24 -0.28 0.03
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.029 r_sphericity_free 31.245 r_sphericity_bonded 12.574 r_dihedral_angle_3_deg 12.531 r_dihedral_angle_4_deg 12.232 r_rigid_bond_restr 10.873 r_dihedral_angle_1_deg 7.48 r_scbond_it 2.562 r_mcangle_it 1.684 r_mcbond_it 1.462
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.029 r_sphericity_free 31.245 r_sphericity_bonded 12.574 r_dihedral_angle_3_deg 12.531 r_dihedral_angle_4_deg 12.232 r_rigid_bond_restr 10.873 r_dihedral_angle_1_deg 7.48 r_scbond_it 2.562 r_mcangle_it 1.684 r_mcbond_it 1.462 r_angle_refined_deg 1.264 r_chiral_restr 0.09 r_gen_planes_refined 0.008 r_bond_refined_d 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1108 Nucleic Acid Atoms Solvent Atoms 252 Heterogen Atoms 24
Software Software Software Name Purpose Blu-Ice data collection AMoRE phasing REFMAC refinement MOSFLM data reduction SCALA data scaling