☰ Navigation Tabs
Crystal Structure of GSK3b in complex with inhibitor 1R
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1GNG
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.2 290 20% PEG-3350, 0.2M Na Formate, pH 7.2, VAPOR DIFFUSION, SITTING DROP, temperature 290.0K
Crystal Properties Matthews coefficient Solvent content 2.92 57.84
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 63.38 α = 99.8 b = 67.116 β = 102.94 c = 67.44 γ = 89.94
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2012-03-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X29A 0.9791 NSLS X29A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 50 97.6 0.06 8.7 2.2 45699
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.34 96 0.687 2.1 2255
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1GNG 2.31 42.49 45698 1408 97.11 0.1911 0.1897 0.1762 0.2339 0.2162 RANDOM 65.6453
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -19.5 2.31 -4.33 14.89 7.09 4.61
RMS Deviations Key Refinement Restraint Deviation r_angle_refined_deg 0.698 r_chiral_restr 0.045 r_bond_refined_d 0.003 r_gen_planes_refined 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5538 Nucleic Acid Atoms Solvent Atoms 207 Heterogen Atoms 40
Software Software Software Name Purpose REFMAC refinement SCALEPACK data scaling PHENIX refinement PDB_EXTRACT data extraction CBASS data collection HKL-3000 data reduction HKL-3000 data scaling PHASER phasing DENZO data reduction