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Crystal structure of a DUF2874 family protein (BACOVA_02504) from Bacteroides ovatus ATCC 8483 at 1.62 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 277 12.0% polyethylene glycol 20000, 0.1M MES pH 6.5, VAPOR DIFFUSION, SITTING DROP, NANODROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.06 40.25
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 41.265 α = 90 b = 54.155 β = 91.42 c = 60.12 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 KOHZU: Double Crystal Si(111) 2012-11-21 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.2 0.918401, 0.979415, 0.979261 ALS 8.2.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.62 29.044 99.7 0.1 7.9 3.6 33727 33727
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.62 1.66 96.7 0.768 0.768 0.9 3 2397
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.62 29.044 33695 1708 99.61 0.1674 0.1655 0.1773 0.2027 0.2096 RANDOM 23.1169
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.2 0.42 1.55 -0.36
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.562 r_dihedral_angle_3_deg 12.127 r_dihedral_angle_4_deg 9.455 r_dihedral_angle_1_deg 5.667 r_mcangle_it 2.884 r_mcbond_it 1.94 r_mcbond_other 1.928 r_angle_refined_deg 1.649 r_angle_other_deg 1.161 r_chiral_restr 0.107
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.562 r_dihedral_angle_3_deg 12.127 r_dihedral_angle_4_deg 9.455 r_dihedral_angle_1_deg 5.667 r_mcangle_it 2.884 r_mcbond_it 1.94 r_mcbond_other 1.928 r_angle_refined_deg 1.649 r_angle_other_deg 1.161 r_chiral_restr 0.107 r_bond_refined_d 0.015 r_gen_planes_refined 0.01 r_bond_other_d 0.006 r_gen_planes_other 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2243 Nucleic Acid Atoms Solvent Atoms 345 Heterogen Atoms 13
Software Software Software Name Purpose MolProbity model building PDB_EXTRACT data extraction SHELX phasing SHARP phasing SCALA data scaling REFMAC refinement MOSFLM data reduction SHELXD phasing autoSHARP phasing