☰ Navigation Tabs
Crystal structure of the Trypanosoma brucei Inosine-Adenosine-Guanosine nucleoside hydrolase in complex with compound UAMC-00312 and allosterically inhibited by a Ni2+ ion
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 7.6 292 0.1M Tris, 23% PEGMME2000, 10mM Ni2SO4, pH 7.6, VAPOR DIFFUSION, temperature 292K
Crystal Properties Matthews coefficient Solvent content 1.88 34.52
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 60.12 α = 90 b = 69.42 β = 90 c = 130.23 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2010-11-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 0.933 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.68 42.91 99.9 0.083 18.94 7 31441 31441 -3 21.247
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.68 1.72 99.2 0.657 0.711 2.94 6.5 2283
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.68 42.91 31439 31439 1590 99.89 0.1521 0.1501 0.188 0.1811 RANDOM 20.6601
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.42 -0.21 0.63
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.694 r_dihedral_angle_4_deg 14.25 r_dihedral_angle_3_deg 12.352 r_dihedral_angle_1_deg 5.236 r_scangle_it 4.124 r_scbond_it 2.475 r_angle_refined_deg 1.68 r_mcangle_it 1.561 r_angle_other_deg 1.002 r_mcbond_it 0.887
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.694 r_dihedral_angle_4_deg 14.25 r_dihedral_angle_3_deg 12.352 r_dihedral_angle_1_deg 5.236 r_scangle_it 4.124 r_scbond_it 2.475 r_angle_refined_deg 1.68 r_mcangle_it 1.561 r_angle_other_deg 1.002 r_mcbond_it 0.887 r_mcbond_other 0.258 r_chiral_restr 0.106 r_bond_refined_d 0.016 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2506 Nucleic Acid Atoms Solvent Atoms 281 Heterogen Atoms 36
Software Software Software Name Purpose XSCALE data scaling REFMAC refinement PDB_EXTRACT data extraction