4HX4

Structure of MNTR mutant E11K complexed with Mn2+


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7.529322% ETHYLENE GLYCOL, 55 MM LITHIUM SULFATE, 2 MM MANGANESE CHLORIDE, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.5651.89

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 49.427α = 90
b = 46.081β = 92.96
c = 74.892γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 315r2007-08-14MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONALS BEAMLINE 8.3.11.1159ALS8.3.1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.6574.7998.80.05222.23.5640214
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.651.7497.40.362.2

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2F5D1.6530.3338181202198.710.235340.233770.26444RANDOM31.787
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
5.38-2.67-3.14-2.08
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg26.776
r_dihedral_angle_3_deg13.59
r_dihedral_angle_4_deg9.786
r_dihedral_angle_1_deg4.72
r_scangle_it2.956
r_scbond_it1.924
r_angle_refined_deg1.12
r_mcangle_it1.044
r_mcbond_it0.733
r_angle_other_deg0.72
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg26.776
r_dihedral_angle_3_deg13.59
r_dihedral_angle_4_deg9.786
r_dihedral_angle_1_deg4.72
r_scangle_it2.956
r_scbond_it1.924
r_angle_refined_deg1.12
r_mcangle_it1.044
r_mcbond_it0.733
r_angle_other_deg0.72
r_nbtor_refined0.299
r_symmetry_hbond_refined0.238
r_symmetry_vdw_refined0.151
r_xyhbond_nbd_refined0.122
r_chiral_restr0.063
r_bond_refined_d0.008
r_gen_planes_refined0.005
r_bond_other_d0.001
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2098
Nucleic Acid Atoms
Solvent Atoms112
Heterogen Atoms2

Software

Software
Software NamePurpose
MOLREPphasing
REFMACrefinement
MOSFLMdata reduction
SCALAdata scaling