☰ Navigation Tabs
Crystal structure of PDE2 catalytic domain in complex with BAY60-7550
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1Z1L PDB ENTRY 1Z1L
Crystallization Crystal Properties Matthews coefficient Solvent content 2.26 45.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 56.26 α = 109.59 b = 73.82 β = 91.93 c = 92.47 γ = 90.88
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2012-06-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL17U 0.9793 SSRF BL17U
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 44.16 97808
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT PDB ENTRY 1Z1L 1.9 44.16 1.96 97767 4915 88.56 0.1754 0.1727 0.1745 0.2266 0.2275
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -4.7068 1.1352 -5.8967 3.516 -3.2882 1.1908
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 13.555 f_angle_d 1.023 f_chiral_restr 0.075 f_bond_d 0.008 f_plane_restr 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 10565 Nucleic Acid Atoms Solvent Atoms 705 Heterogen Atoms 148
Software Software Software Name Purpose ADSC data collection MOLREP phasing PHENIX refinement iMOSFLM data reduction