☰ Navigation Tabs
Structure of cytoplasmic domain of TCPE from Vibrio cholerae
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.4 293 100 mM Tris-HCl, 1.55 M ammonium sulfate, pH 7.4, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.26 45.57
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 34.79 α = 90 b = 73.61 β = 90 c = 95.9 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2010-04-01 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 0.96109, 0.97905 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.88 20 99.5 10428 10378 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.88 1.93 96.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.88 19.63 10378 9890 488 99.48 0.21972 0.21828 0.24739 0.2628 RANDOM 38.531
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.95 2.67 -0.72
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.698 r_dihedral_angle_4_deg 21.649 r_dihedral_angle_3_deg 13.865 r_dihedral_angle_1_deg 4.423 r_scangle_it 2.431 r_scbond_it 1.532 r_angle_refined_deg 1.014 r_mcangle_it 0.907 r_angle_other_deg 0.852 r_mcbond_it 0.468
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.698 r_dihedral_angle_4_deg 21.649 r_dihedral_angle_3_deg 13.865 r_dihedral_angle_1_deg 4.423 r_scangle_it 2.431 r_scbond_it 1.532 r_angle_refined_deg 1.014 r_mcangle_it 0.907 r_angle_other_deg 0.852 r_mcbond_it 0.468 r_mcbond_other 0.079 r_chiral_restr 0.061 r_bond_refined_d 0.006 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 811 Nucleic Acid Atoms Solvent Atoms 25 Heterogen Atoms 5
Software Software Software Name Purpose Blu-Ice data collection SQUASH phasing REFMAC refinement XDS data reduction XSCALE data scaling