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Structure of Staphylococcus aureus biotin protein ligase in complex with biotin acetylene
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 298 10% PEG 8000, 0.1M Tris pH 7.5, 10% glycerol, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 3.71 66.84
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 93.02 α = 90 b = 93.02 β = 90 c = 129.94 γ = 90
Symmetry Space Group P 42 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON AUSTRALIAN SYNCHROTRON BEAMLINE MX1 Australian Synchrotron MX1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.65 17103 16247
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.65 19.81 16247 856 100 0.19889 0.19696 0.1899 0.23594 0.2275 RANDOM 45.958
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.68 0.68 -1.36
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.186 r_dihedral_angle_4_deg 21.389 r_dihedral_angle_3_deg 18.657 r_dihedral_angle_1_deg 7.036 r_scangle_it 5.327 r_scbond_it 3.152 r_mcangle_it 2.025 r_angle_refined_deg 1.865 r_mcbond_it 0.995 r_chiral_restr 0.12
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.186 r_dihedral_angle_4_deg 21.389 r_dihedral_angle_3_deg 18.657 r_dihedral_angle_1_deg 7.036 r_scangle_it 5.327 r_scbond_it 3.152 r_mcangle_it 2.025 r_angle_refined_deg 1.865 r_mcbond_it 0.995 r_chiral_restr 0.12 r_bond_refined_d 0.02 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2613 Nucleic Acid Atoms Solvent Atoms 146 Heterogen Atoms 15
Software Software Software Name Purpose XDS data scaling REFMAC refinement