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Crystal structure of a chimeric DAH7PS
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1VR6
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8 281.15 0.2M sodium chloride, 20%(w/v) polyethylene glycol 6000, 0.1M Tris, 0.02%(w/v) sodium azide, pH 8, VAPOR DIFFUSION, SITTING DROP, temperature 281.15K
Crystal Properties Matthews coefficient Solvent content 2.34 47.43
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 76.901 α = 90 b = 130.852 β = 90 c = 138.07 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210r M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON AUSTRALIAN SYNCHROTRON BEAMLINE MX1 0.953688 Australian Synchrotron MX1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3 94.976 95.5 0.101 8.8 3 27079 27079
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Rrim I (All) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3 3.16 97.6 0.581 0.581 0.702 0.389 1.3 3 3985
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1VR6 3 37.94 27048 1350 94.54 0.1948 0.192 0.1887 0.2481 0.2433 RANDOM 81.971
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.88 0.97 -0.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.808 r_dihedral_angle_4_deg 18.161 r_dihedral_angle_3_deg 16.9 r_dihedral_angle_1_deg 4.99 r_angle_refined_deg 1.143 r_chiral_restr 0.073 r_bond_refined_d 0.007 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 10019 Nucleic Acid Atoms Solvent Atoms 21 Heterogen Atoms 52
Software Software Software Name Purpose SCALA data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction ADSC data collection XSCALE data scaling