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Structure of the tetramerization domain of Nipah virus phosphoprotein
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5 293 17% PEG 3350, 1M LiCl, 0.1M sodium citrate, 0.1M Arginine, 4% Hexanediol, 0.001% NaN3, pH 5.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.76 55.39
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 59.5 α = 90 b = 85.6 β = 94.7 c = 122.6 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r BEND CYLINDRICAL MIRROR 2012-05-19 M SINGLE WAVELENGTH 2 1 x-ray 100 PIXEL PSI PILATUS 6M BI- MORPH MIRRORS 2012-03-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 ESRF ID23-1 2 SYNCHROTRON SOLEIL BEAMLINE PROXIMA 1 SOLEIL PROXIMA 1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3 48.75 99.5 0.143 7.38 4.06 47924
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3 3.08 99.9 0.653 1.93 4.15
Refinement Statistics Diffraction ID Structure Solution Method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION SAD 3 48.75 1.18 48158 47866 2439 99 0.178 0.175 0.1748 0.229 0.2222
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.092 -3.8477 -7.5798 8.6718
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 19.088 f_angle_d 1.591 f_chiral_restr 0.081 f_bond_d 0.013 f_plane_restr 0.01
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6293 Nucleic Acid Atoms Solvent Atoms 7 Heterogen Atoms 60
Software Software Software Name Purpose DNA data collection HKL2Map model building PHENIX refinement XDS data reduction XDS data scaling HKL2Map phasing