4G9Z

Lassa nucleoprotein with dsRNA reveals novel mechanism for immune suppression


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1EVAPORATION4.529318% PEG MME 5000, 0.1M Na-citrate, pH4.5, 2.4% PEG MME350, EVAPORATION, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.2445.03

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 46.744α = 90
b = 46.744β = 90
c = 217.315γ = 90
Symmetry
Space GroupP 41 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray196PIXELPSI PILATUS 6M2011-06-06MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I020.8726DiamondI02

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.9939.220.1180.1186.83.21572322.1

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONTHROUGHOUT2.0354.331572383699.960.204960.20320.24041RANDOM21.387
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.78-1.783.56
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.427
r_sphericity_free22.653
r_dihedral_angle_4_deg15.936
r_dihedral_angle_3_deg12.443
r_sphericity_bonded5.83
r_dihedral_angle_1_deg5.424
r_rigid_bond_restr4.191
r_angle_refined_deg1.095
r_angle_other_deg0.784
r_chiral_restr0.069
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.427
r_sphericity_free22.653
r_dihedral_angle_4_deg15.936
r_dihedral_angle_3_deg12.443
r_sphericity_bonded5.83
r_dihedral_angle_1_deg5.424
r_rigid_bond_restr4.191
r_angle_refined_deg1.095
r_angle_other_deg0.784
r_chiral_restr0.069
r_bond_refined_d0.007
r_gen_planes_refined0.004
r_bond_other_d0.001
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_it
r_mcbond_other
r_mcangle_it
r_scbond_it
r_scangle_it
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1613
Nucleic Acid Atoms172
Solvent Atoms88
Heterogen Atoms1

Software

Software
Software NamePurpose
iMOSFLMdata reduction
PHASERphasing
REFMACrefinement
SCALAdata scaling