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LigG from Sphingobium sp. SYK-6 is related to the glutathione transferase omega class
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 Microbatch under oil 4.6 277 1.5 microliters protein (19 mg/mL) + 1.5 microliters (0.2 M ammonium sulfate, 0.1M sodium acetate trihydrate pH 4.6, 25% polyethylene glycol 4000), Microbatch under oil, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.41 48.97
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 56.801 α = 90 b = 56.801 β = 90 c = 183.73 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r MIRRORS 2011-06-30 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM30A 0.98007, 0.98020, 0.97856 ESRF BM30A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.2 54.267 98.29 0.058 16.8 6.8 95039 93417
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.2 1.27 96.7 0.048 4 6.7
Refinement Statistics Diffraction ID Structure Solution Method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD 1.2 40.164 1.34 93399 4678 98.4 0.1404 0.1396 0.1397 0.1547 0.155 RANDOM
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 13.284 f_angle_d 1.443 f_chiral_restr 0.082 f_bond_d 0.011 f_plane_restr 0.009
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2115 Nucleic Acid Atoms Solvent Atoms 376 Heterogen Atoms 29
Software Software Software Name Purpose X-NEMO data collection SHELXCD phasing SHELXE model building PHENIX refinement XDS data reduction SCALA data scaling