☰ Navigation Tabs
crystal structure of beta-site app-cleaving enzyme 1 (bace-wt) complex with N-(N-(4-amino-3,5- dichlorobenzyl)carbamimidoyl)-3-(4-methoxyphenyl)-5- methyl-4-isothiazolecarboxamide
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.2 298 35% PEG8K, 0.2 M ammonium sulfate, pH 6.2, vapor diffusion, hanging drop, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.49 50.52
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 86.334 α = 90 b = 131.219 β = 97.6 c = 88.947 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RIGAKU SATURN 92 MICROMAX CONFOCAL 2005-04-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.65 50 99.8 0.135 5.5 3.7 56952
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.65 2.74 99 0.49 3.5 5619
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.65 44.08 56926 2884 99.76 0.2196 0.2171 0.2172 0.2669 0.266 RANDOM 20.8044
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.67 0.16 -1.62 3.33
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.297 r_dihedral_angle_3_deg 15.56 r_dihedral_angle_4_deg 15.099 r_dihedral_angle_1_deg 5.927 r_scangle_it 1.562 r_angle_refined_deg 1.364 r_scbond_it 0.935 r_mcangle_it 0.8 r_mcbond_it 0.431 r_nbtor_refined 0.309
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.297 r_dihedral_angle_3_deg 15.56 r_dihedral_angle_4_deg 15.099 r_dihedral_angle_1_deg 5.927 r_scangle_it 1.562 r_angle_refined_deg 1.364 r_scbond_it 0.935 r_mcangle_it 0.8 r_mcbond_it 0.431 r_nbtor_refined 0.309 r_symmetry_vdw_refined 0.288 r_nbd_refined 0.194 r_symmetry_hbond_refined 0.192 r_xyhbond_nbd_refined 0.153 r_chiral_restr 0.091 r_bond_refined_d 0.009 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 12146 Nucleic Acid Atoms Solvent Atoms 435 Heterogen Atoms 129
Software Software Software Name Purpose REFMAC refinement CNS refinement SCALEPACK data scaling PDB_EXTRACT data extraction StructureStudio data collection HKL-2000 data reduction HKL-2000 data scaling CNS phasing