4FR2

Alcohol dehydrogenase from Oenococcus oeni


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6.52930.1 M MES (pH 6.5), 16 % [w/w] PEG20000, 10mM CaCl2 in the drops, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
3.4364.1

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 88.825α = 90
b = 88.825β = 90
c = 151.028γ = 90
Symmetry
Space GroupP 43 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray200CCDMARMOSAIC 225 mm CCD2012-06-15MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID23-20.872600ESRFID23-2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
13.276.565910505

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Cut-off Sigma (F)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT3BFJ Chain A3.276.561.9993549899.10.281310.278810.33406RANDOM81.065
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
3.933.93-7.86
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.912
r_dihedral_angle_3_deg21.573
r_dihedral_angle_4_deg19.187
r_dihedral_angle_1_deg6.045
r_angle_refined_deg1.191
r_scangle_it1.171
r_mcangle_it0.726
r_scbond_it0.636
r_mcbond_it0.391
r_chiral_restr0.081
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.912
r_dihedral_angle_3_deg21.573
r_dihedral_angle_4_deg19.187
r_dihedral_angle_1_deg6.045
r_angle_refined_deg1.191
r_scangle_it1.171
r_mcangle_it0.726
r_scbond_it0.636
r_mcbond_it0.391
r_chiral_restr0.081
r_bond_refined_d0.008
r_gen_planes_refined0.005
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2668
Nucleic Acid Atoms
Solvent Atoms
Heterogen Atoms1

Software

Software
Software NamePurpose
REFMACrefinement