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Alcohol dehydrogenase from Oenococcus oeni
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3BFJ 3BFJ Chain A
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 293 0.1 M MES (pH 6.5), 16 % [w/w] PEG20000, 10mM CaCl2 in the drops, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.43 64.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 88.825 α = 90 b = 88.825 β = 90 c = 151.028 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 200 CCD MARMOSAIC 225 mm CCD 2012-06-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-2 0.872600 ESRF ID23-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.2 76.56 59 10505
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3BFJ Chain A 3.2 76.56 1.9 9935 498 99.1 0.28131 0.27881 0.2776 0.33406 0.3304 RANDOM 81.065
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.93 3.93 -7.86
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.912 r_dihedral_angle_3_deg 21.573 r_dihedral_angle_4_deg 19.187 r_dihedral_angle_1_deg 6.045 r_angle_refined_deg 1.191 r_scangle_it 1.171 r_mcangle_it 0.726 r_scbond_it 0.636 r_mcbond_it 0.391 r_chiral_restr 0.081
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.912 r_dihedral_angle_3_deg 21.573 r_dihedral_angle_4_deg 19.187 r_dihedral_angle_1_deg 6.045 r_angle_refined_deg 1.191 r_scangle_it 1.171 r_mcangle_it 0.726 r_scbond_it 0.636 r_mcbond_it 0.391 r_chiral_restr 0.081 r_bond_refined_d 0.008 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2668 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 1
Software Software Software Name Purpose REFMAC refinement