4FQA

Crystal structure of toxic effector Tse1


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION8.3293100mM Tris, 25%PEG3350, mM DTT, pH 8.3, VAPOR DIFFUSION, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.1242.01

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 37.64α = 90
b = 61.46β = 90
c = 64.29γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDRIGAKU SATURN 944+2011-09-15MSINGLE WAVELENGTH
21x-ray100CCDRIGAKU SATURN 944+2011-10-14MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU MICROMAX-002+1.5418
2ROTATING ANODERIGAKU MICROMAX-002+1.5418

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
1,22.11596.70.1185.612272118662215.75
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1,22.142.251000.3133.76.241206

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSIRASTHROUGHOUT2.1158366797439491.270.183080.180840.22833RANDOM22.881
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.4-0.43-0.97
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.93
r_dihedral_angle_3_deg11.631
r_dihedral_angle_4_deg10.647
r_dihedral_angle_1_deg5.285
r_angle_refined_deg1.474
r_chiral_restr0.098
r_bond_refined_d0.017
r_gen_planes_refined0.008
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1159
Nucleic Acid Atoms
Solvent Atoms120
Heterogen Atoms

Software

Software
Software NamePurpose
CrystalCleardata collection
PHENIXmodel building
REFMACrefinement
CrystalCleardata reduction
SCALAdata scaling
PHENIXphasing