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Crystal Structure of 5-chloromuconolactone isomerase from Rhodococcus opacus 1CP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 8.5 298 PEG8000, pH 8.5, vapor diffusion, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.64 53.32
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 122.187 α = 90 b = 79.657 β = 105.54 c = 125.907 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2008-12-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X12 0.979 EMBL/DESY, HAMBURG X12
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 121.302 98.4 0.085 0.085 11.7 3.3 133960 133960
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.21 94.2 0.561 0.561 1.4 3.3 18662
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.2 30 117344 5903 99.05 0.2317 0.2281 0.2276 0.3008 0.2958 RANDOM 49.3208
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.37 -2.33 1.13 -2
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.723 r_dihedral_angle_4_deg 23.53 r_dihedral_angle_3_deg 19.94 r_dihedral_angle_1_deg 7.357 r_scangle_it 3.264 r_scbond_it 2.093 r_angle_refined_deg 1.613 r_mcangle_it 1.469 r_mcbond_it 0.8 r_chiral_restr 0.105
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.723 r_dihedral_angle_4_deg 23.53 r_dihedral_angle_3_deg 19.94 r_dihedral_angle_1_deg 7.357 r_scangle_it 3.264 r_scbond_it 2.093 r_angle_refined_deg 1.613 r_mcangle_it 1.469 r_mcbond_it 0.8 r_chiral_restr 0.105 r_bond_refined_d 0.014 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 15290 Nucleic Acid Atoms Solvent Atoms 614 Heterogen Atoms
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling MOLREP phasing REFMAC refinement PDB_EXTRACT data extraction MAR345dtb data collection