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Crystal Structure of recombinant human Hexokinase type I with Mannose 6-Phosphate
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 hanging drop 6 277 PEG 4000, PEG 8000, sodium acetate, sodium citrate, pH 6.0, hanging drop, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.91 57.78
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 82.44 α = 90 b = 122.09 β = 92.65 c = 118.95 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD NOIR-1 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 4.2.2 ALS 4.2.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 45.78 99.8 64558 61373
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.7 2.77 99.85
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.7 45.78 64558 61373 3157 99.78 0.282 0.2447 0.2442 0.2407 0.2544 0.2478 RANDOM 55.2175
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.1 0.24 0.16 -0.04
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.619 r_dihedral_angle_4_deg 17.292 r_dihedral_angle_3_deg 14.2 r_dihedral_angle_1_deg 3.579 r_scangle_it 2.457 r_mcangle_it 1.387 r_scbond_it 1.358 r_angle_refined_deg 0.887 r_mcbond_it 0.716 r_chiral_restr 0.059
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.619 r_dihedral_angle_4_deg 17.292 r_dihedral_angle_3_deg 14.2 r_dihedral_angle_1_deg 3.579 r_scangle_it 2.457 r_mcangle_it 1.387 r_scbond_it 1.358 r_angle_refined_deg 0.887 r_mcbond_it 0.716 r_chiral_restr 0.059 r_bond_refined_d 0.005 r_gen_planes_refined 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 14064 Nucleic Acid Atoms Solvent Atoms 288 Heterogen Atoms 142
Software Software Software Name Purpose d*TREK data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction AMoRE phasing