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Structure of SusE with alpha-cyclodextrin
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other Semet SusE
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5 292 16-20% PEG 6000, 2M NaCl, 100mM malonate, pH 5.0, VAPOR DIFFUSION, HANGING DROP, temperature 292K
Crystal Properties Matthews coefficient Solvent content 3.11 60.43
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 93.397 α = 90 b = 93.397 β = 90 c = 195.273 γ = 120
Symmetry Space Group P 61 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 130 CCD MARMOSAIC 300 mm CCD 2010-12-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-D 0.97941 APS 21-ID-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 50 95.7 0.066 35.4 9.3 17403 17403
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.54 80.9 0.364 2 2.4 715
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT Semet SusE 2.5 50 16523 879 95.9 0.20876 0.20712 0.2038 0.24067 0.2436 RANDOM 54.559
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.32 0.66 1.32 -1.98
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.518 r_dihedral_angle_4_deg 27.912 r_dihedral_angle_3_deg 21.645 r_dihedral_angle_1_deg 10.294 r_scangle_it 6.592 r_scbond_it 4.265 r_mcangle_it 3.088 r_mcbond_it 1.619 r_angle_refined_deg 0.832 r_chiral_restr 0.071
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.518 r_dihedral_angle_4_deg 27.912 r_dihedral_angle_3_deg 21.645 r_dihedral_angle_1_deg 10.294 r_scangle_it 6.592 r_scbond_it 4.265 r_mcangle_it 3.088 r_mcbond_it 1.619 r_angle_refined_deg 0.832 r_chiral_restr 0.071 r_gen_planes_refined 0.016 r_bond_refined_d 0.012 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1703 Nucleic Acid Atoms Solvent Atoms 30 Heterogen Atoms 78
Software Software Software Name Purpose MD2 data collection AMoRE phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling