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Crystal Structure of PelD 158-CT from Pseudomonas aeruginosa PAO1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 hanging drop 8 298 100 mM Tris, pH 8, 200 mM MgCl2, 10% (v/v) PEG 8000, hanging drop, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.12 41.87
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 60.29 α = 90 b = 42.44 β = 112.78 c = 60.47 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray IMAGE PLATE MAR scanner 300 mm plate M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-F 1.0 APS 21-ID-F
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 99.8 0.047 24.69 19307 -3 41.15
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.1 99.7 0.468 4.04
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2 25 19298 965 100 0.2346 0.232 0.2454 0.2852 0.2984 RANDOM 42.27
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.35 -0.67 -1.47 2.29
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.722 r_dihedral_angle_4_deg 18.013 r_dihedral_angle_3_deg 17.575 r_dihedral_angle_1_deg 6.198 r_scangle_it 3.06 r_scbond_it 1.848 r_angle_refined_deg 1.351 r_mcangle_it 1.292 r_mcbond_it 0.711 r_chiral_restr 0.085
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.722 r_dihedral_angle_4_deg 18.013 r_dihedral_angle_3_deg 17.575 r_dihedral_angle_1_deg 6.198 r_scangle_it 3.06 r_scbond_it 1.848 r_angle_refined_deg 1.351 r_mcangle_it 1.292 r_mcbond_it 0.711 r_chiral_restr 0.085 r_bond_refined_d 0.012 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2370 Nucleic Acid Atoms Solvent Atoms 86 Heterogen Atoms
Software Software Software Name Purpose XSCALE data scaling REFMAC refinement PDB_EXTRACT data extraction