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Study on structure and function relationships in human Pirin with Cobalt ion
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 289 PEG 200000, 0.1M MES, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 289K
Crystal Properties Matthews coefficient Solvent content 2.3 46.58
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.127 α = 90 b = 66.254 β = 90 c = 106.127 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RIGAKU SATURN 944 2011-08-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU300 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 50 84.1 0.116 9.4 3.7 11040 9285
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.54 66 0.546 1.6 3.5 345
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.65 25.08 7399 369 81.42 0.1946 0.1924 0.1807 0.2349 0.2234 RANDOM 14.6705
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.16 4.64 -4.79
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.566 r_dihedral_angle_4_deg 21.145 r_dihedral_angle_3_deg 18.914 r_dihedral_angle_1_deg 7.701 r_angle_refined_deg 1.819 r_angle_other_deg 0.927 r_chiral_restr 0.097 r_bond_refined_d 0.014 r_gen_planes_refined 0.009 r_gen_planes_other 0.004
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.566 r_dihedral_angle_4_deg 21.145 r_dihedral_angle_3_deg 18.914 r_dihedral_angle_1_deg 7.701 r_angle_refined_deg 1.819 r_angle_other_deg 0.927 r_chiral_restr 0.097 r_bond_refined_d 0.014 r_gen_planes_refined 0.009 r_gen_planes_other 0.004 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2241 Nucleic Acid Atoms Solvent Atoms 56 Heterogen Atoms 17
Software Software Software Name Purpose CrystalClear data collection MOLREP phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling