4EE6

Crystal Structure of the Novel Phenazine Prenyltransferase EpzP (methylated)


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP8.5277200 mM magnesium chloride, 30% (w/v) PEG4000, Tris hydrochloride ph 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties
Matthews coefficientSolvent content
2.0540.02

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 42.14α = 90
b = 135.6β = 95.73
c = 48.53γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 225 mm CCD2010-08-16MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X06DA1.00000SLSX06DA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.333093.6123759115868-3-3
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.331.3663.7

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.3329.9311237911237934761000.190880.190190.21313RANDOM10.977
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.320.17-0.470.82
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.202
r_dihedral_angle_3_deg12.005
r_dihedral_angle_4_deg11.894
r_dihedral_angle_1_deg5.925
r_scangle_it1.952
r_scbond_it1.554
r_angle_refined_deg1.41
r_mcangle_it1.162
r_angle_other_deg0.94
r_mcbond_it0.934
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.202
r_dihedral_angle_3_deg12.005
r_dihedral_angle_4_deg11.894
r_dihedral_angle_1_deg5.925
r_scangle_it1.952
r_scbond_it1.554
r_angle_refined_deg1.41
r_mcangle_it1.162
r_angle_other_deg0.94
r_mcbond_it0.934
r_mcbond_other0.463
r_chiral_restr0.089
r_bond_refined_d0.011
r_gen_planes_refined0.007
r_gen_planes_other0.005
r_bond_other_d0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4485
Nucleic Acid Atoms
Solvent Atoms804
Heterogen Atoms39

Software

Software
Software NamePurpose
PHASERphasing
REFMACrefinement
XDSdata reduction
XSCALEdata scaling