X-RAY DIFFRACTION

Crystallization

Crystal Properties
Matthews coefficientSolvent content
2.3146.72

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 146.55α = 90
b = 146.55β = 90
c = 146.55γ = 90
Symmetry
Space GroupP 21 3

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-rayPIXELPSI PILATUS 6MMSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X06SASLSX06SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.82103.62799.70.08724.0125480-361.346
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.822.9598.80.6854.37

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.8248.8525470129499.870.25640.25430.2941RANDOM53.8592
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.615
r_dihedral_angle_4_deg16.851
r_dihedral_angle_3_deg15.038
r_dihedral_angle_1_deg4.344
r_angle_refined_deg0.861
r_scangle_it0.779
r_mcangle_it0.655
r_scbond_it0.481
r_mcbond_it0.363
r_nbtor_refined0.289
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.615
r_dihedral_angle_4_deg16.851
r_dihedral_angle_3_deg15.038
r_dihedral_angle_1_deg4.344
r_angle_refined_deg0.861
r_scangle_it0.779
r_mcangle_it0.655
r_scbond_it0.481
r_mcbond_it0.363
r_nbtor_refined0.289
r_symmetry_vdw_refined0.18
r_nbd_refined0.176
r_xyhbond_nbd_refined0.111
r_symmetry_hbond_refined0.1
r_chiral_restr0.056
r_bond_refined_d0.006
r_gen_planes_refined0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms5861
Nucleic Acid Atoms
Solvent Atoms16
Heterogen Atoms58

Software

Software
Software NamePurpose
XSCALEdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction