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Crystal Structure of Papaya mosaic virus capsid protein
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 7.6 277 100 mM Hepes, 9% PEG 6000, pH 7.6, VAPOR DIFFUSION, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.1 41.39
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 72.943 α = 90 b = 72.943 β = 90 c = 133.325 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2011-02-10 M SINGLE WAVELENGTH 2 1 x-ray 100 CCD ADSC QUANTUM 315 2011-02-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X25 1.1000 NSLS X25 2 SYNCHROTRON NSLS BEAMLINE X25 1.0082 NSLS X25
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 2.7 45 99 0.129 0.109 16.7 8.5 11087 11047 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 2.7 2.75 99 0.446 0.414 4.2 8.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SIRAS THROUGHOUT 2.7 30 10502 529 99.87 0.17117 0.16838 0.22848 0.2002 RANDOM 40.274
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.81 0.4 0.81 -1.21
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.644 r_dihedral_angle_4_deg 21.66 r_dihedral_angle_3_deg 18.579 r_dihedral_angle_1_deg 6.557 r_scangle_it 4.112 r_scbond_it 2.411 r_mcangle_it 1.791 r_angle_refined_deg 1.71 r_mcbond_it 0.944 r_chiral_restr 0.111
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.644 r_dihedral_angle_4_deg 21.66 r_dihedral_angle_3_deg 18.579 r_dihedral_angle_1_deg 6.557 r_scangle_it 4.112 r_scbond_it 2.411 r_mcangle_it 1.791 r_angle_refined_deg 1.71 r_mcbond_it 0.944 r_chiral_restr 0.111 r_bond_refined_d 0.019 r_gen_planes_refined 0.008
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2468 Nucleic Acid Atoms Solvent Atoms 153 Heterogen Atoms
Software Software Software Name Purpose CBASS data collection PHENIX model building REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling PHENIX phasing