4DAT

Structure of 14-3-3 sigma in complex with PADI6 14-3-3 binding motif II


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7.527726.6% v/v PEG400, 0.19 M calcium chloride, 5% v/v glycerol, 0.095 M HEPES sodium, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties
Matthews coefficientSolvent content
2.6453.41

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 82.22α = 90
b = 112.36β = 90
c = 62.73γ = 90
Symmetry
Space GroupC 2 2 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELPSI PILATUS 6M2010-08-22MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X10SA1.040SLSX10SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.445.58498.60.02726.795744156629-3-322.342
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.41.697.30.1627.05

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.445.58574415662928321000.14890.14890.14710.1832RANDOM19.7547
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.1-0.03-0.07
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.478
r_dihedral_angle_4_deg16.445
r_dihedral_angle_3_deg12.197
r_scangle_it7.849
r_scbond_it5.647
r_dihedral_angle_1_deg4.772
r_mcangle_it3.549
r_rigid_bond_restr3.125
r_mcbond_it2.556
r_angle_refined_deg2.249
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.478
r_dihedral_angle_4_deg16.445
r_dihedral_angle_3_deg12.197
r_scangle_it7.849
r_scbond_it5.647
r_dihedral_angle_1_deg4.772
r_mcangle_it3.549
r_rigid_bond_restr3.125
r_mcbond_it2.556
r_angle_refined_deg2.249
r_chiral_restr0.15
r_bond_refined_d0.034
r_gen_planes_refined0.014
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1799
Nucleic Acid Atoms
Solvent Atoms393
Heterogen Atoms1

Software

Software
Software NamePurpose
XSCALEdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
go.comdata collection
PHASERphasing