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Metallosphera sedula Vps4 crystal structure
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7 20 MM TRIS, 50 MM NACL, 0.2 M SODIUM MALONATE PH 7, 19% PEG 3350
Crystal Properties Matthews coefficient Solvent content 3.06 59.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 99.7 α = 90 b = 127.39 β = 90 c = 191.23 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2013-03-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.6 48 99.1 0.09 8.31 5.3 27368 1.76
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.6 3.8 99.6 0.62 1.76 5.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT NONE 3.6 106.02 27368 1464 99.67 0.26688 0.26421 0.2629 0.31822 0.3153 RANDOM 142.607
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 10.69 -6.45 -4.24
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.442 r_dihedral_angle_3_deg 22.426 r_dihedral_angle_4_deg 17.634 r_mcangle_it 14.922 r_mcbond_it 9.041 r_mcbond_other 9.041 r_dihedral_angle_1_deg 8.137 r_scbond_it 7.843 r_angle_other_deg 1.755 r_angle_refined_deg 1.716
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.442 r_dihedral_angle_3_deg 22.426 r_dihedral_angle_4_deg 17.634 r_mcangle_it 14.922 r_mcbond_it 9.041 r_mcbond_other 9.041 r_dihedral_angle_1_deg 8.137 r_scbond_it 7.843 r_angle_other_deg 1.755 r_angle_refined_deg 1.716 r_chiral_restr 0.103 r_bond_refined_d 0.01 r_bond_other_d 0.007 r_gen_planes_refined 0.007 r_gen_planes_other 0.005 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 12875 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling CRANK2 phasing